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arXiv 2004-12-01 0 views

Finding Approximate Palindromes in Strings Quickly and Simply

Allison, L.

Original · EN

Described are two algorithms to find long approximate palindromes in a string, for example a DNA sequence. A simple algorithm requires O(n)-space and almost always runs in O(k.n)-time where n is the length of the string and k is the number of ``errors'' allowed in the palindrome. Its worst-case time-complexity is O(n²) but this does not occur with real biological sequences. A more complex algorithm guarantees O(k.n) worst-case time complexity.

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